The MRC-University of Glasgow Centre for Virus Research (CVR) has been running a successful training course on Viral Bioinformatics and Genomics annually since 2015 and applications are now open for the 2023 course. This will be a 5-day course, which will consist of a series of lectures and practical exercises that directly address bioinformatic challenges […]
Read MoreEssential AWK Commands for Next Generation Sequence Analysis
- April 30, 2015
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Here are the few essential awk command line scripts for next generation sequence analysis. Users need latest version of gawk to run commands with bitwise operations. Most of the Linux distributions come with gawk. However OSX users have to install it from here http://rudix.org/packages/gawk.html Count number of reads in a FastQ file awk ‘END{print NR/4}’ […]
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