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Retrovirus reference sequence library (version 2013-12-26)

Click on virus names to view reference sequence details.

Subfamily Orthoretrovirinae

Supertribe Alnilamretrovirinae (class I)


Tribe Alnilam


Genus Aves-ERV-H

NameSubgroupAccession #
Columba-H--
Falco-H--
Melopsittacus-H--
Pseudopodoces-H--
Taeniopygia-H--

Genus Aves-ERV-R

NameSubgroupAccession #
Anas-R--
Columba-R--
Corvus-R-AJ236130.1
Falco-R--
Gallus-R--
Melopsittacus-R--
Taeniopygia-R--

Genus ERV-30/9/W

NameSubgroupAccession #
ERV-9--
HERV-30--
HERV-W--

Genus ERV-E

NameSubgroupAccession #
HERV-EHERV-E-
HERV-RHERV-R-
PERV-EPERV-ENC_003059.1
RRHERV-IRRHERV-I-

Genus ERV-Fc

NameSubgroupAccession #
ERV-Fc--

Genus ERV-I

NameSubgroupAccession #
HERV-IHERV-I-
ChiRV1-DQ280312.2
RV-komodo_dragon-Y07807.1
RV-lemon_shark-Y07810.1

Genus ERV-XA/Fb/H

NameSubgroupAccession #
HERV-FbERV-Fb-
HERV-HERV-H-
HERV-XAERV-XA-

Genus Gammaretrovirus

NameSubgroupAccession #
CERV-1CERV-1-
CfERVCERV-1-
KwERVCERV-1GQ222416.1
PERV-ACERV-1EU789636.1
RhERV-1aCERV-1-
RhERV-1bCERV-1-
HERV-TERV-T-
KoRVGaLVAF151794.2
Mus_dunni-ERVGaLVAF053745
BAEVMLVAHZZ01047987.1
CERV-2MLV-
ERV-American_Marten-IMLV-
ERV-Bank_vole-IMLV-
FeLVMLVM18247.1
MLVMLVJ02255.1
RD114MLVNC_009889.1
PERV-CPERV-CHM159246.1
DIAVREV-
Echidna-ERVREV-
Galidia-ERVREV-
REVREVFJ439119.1
RfRVRfRVJQ303225.1
DDEV-KC128851.1
ERV-Asian_house_mouse-I--
ERV-Beaver-II--
GGEV-KC128853.1
GMEV-KC128848.1
HaEV-X99925.1
LAcEV-KC128847.1
LAlEV-KC128855.1
OOEV2-KC128848.1
PPEV-KC128854.1
SCEV-KC128849.1
TTEV-ABRN02237111
VuEV-X99935.1

Genus Unclassified

NameSubgroupAccession #
SnRVSnakeheadU26458.1
HERV-Pb--
HERV-V--
RV-edible_frog-AJ236128.1
RV-European_adder-AJ236132.1
RV-false_gharial-AJ236131.1
RV-Koa_Tao_Island_caecilian-AJ236118.1
RV-marbled_caecilian-AJ236117.1
RV-natterjack_toad-AJ236115.1
RV-pit_viper-AJ236112.1
SpEV-X85037

Tribe Epsilon


Genus Epsilonretrovirus

NameSubgroupAccession #
WDSVEpsilonretrovirusAF033822.1
WEHV-1EpsilonretrovirusAF133051.1
WEHV-2EpsilonretrovirusAF133052.1

Genus Unclassified

NameSubgroupAccession #
Xen1AmphibianNC_010955.1

Supertribe Mintakaretrovirinae (class II)


Tribe Delta


Genus Deltaretrovirus

NameSubgroupAccession #
BLVBovineK02120.1
HTLV-1PrimateJ02029.1
HTLV-2PrimateM10060.1
HTLV-3PrimateDQ093792.1
HTLV-4PrimateEF488483.1
STLV-1PrimateAY590142.1

Tribe Lenti


Genus Lentivirus

NameSubgroupAccession #
BIVBovineM32690.1
JDVBovineU21603.1
MELVmpfCarnivora-
EIAV-AmEquineAF016316
EIAV-AsEquineAF327877
EIAV-EuEquineJX480632
FIVfcaFelineM25381.1
FIVomaFelineU56928
FIVpcoFelineEF455613
FIVpleFelineEU117992
RELIKLagomorph-
HIV-1PrimateNC_001802.1
HIV-2PrimateM30502.1
pSIVgmlProsimian-
SRLV-ASmall ruminantM60609.1
SRLV-BSmall ruminantM33677.1
SRLV-B3Small ruminantJF502416
SRLV-CSmall ruminantAF322109
SRLV-ESmall ruminantGQ381130

Tribe Mintaka


Genus Alpharetrovirus

NameSubgroupAccession #
ALV-ev1ALVAY013303.1
ALV-JALVHQ900844.1
ERV-Tragopan-IALV-
MgALVALV-
RSVALVJ02342.1

Genus Aves-ERV-F

NameSubgroupAccession #
ERV-Toucanet-I--
Taeniopygia-F--

Genus Betaretrovirus

NameSubgroupAccession #
BERV-beta3B-typeEF030818.1
EqERV-b1B-type-
ERV-Bison-IB-typeAY820051.1
ERV-Colobus-IB-typeAY820104.1
ERV-Giraffe-IB-typeAY820103.1
MMTVB-typeM15122.1
ERV-Rissos_dolphin-ID-typeAY820048.1
ERV-Slow_loris-ID-typeAY820111.1
JSRVD-typeM80216.1
MPMVD-typeM12349.1
Muntiacus-ERV-d1D-type-
RhERV-d1D-type-
SMRV-HD-typeM23385.1
SRV-1D-typeM11841.1
SRV-2D-typeM16605.1
SRV-4D-typeM16605.1
TvERVD-typeAF284693.1

Genus ERV-K

NameSubgroupAccession #
HERV-K-14C14C-
HERV-K-HML2HML2-
HERV-K-HML4HML4-
HERV-K-HML5HML5-
HERV-K-HML8HML8-
HERV-K-HML9HML9-

Genus HML6

NameSubgroupAccession #
HERV-K-HML6--

Genus IAP

NameSubgroupAccession #
ERV-Prairie_dog-IIA-typeAY820050.1
IAPEA-type-
RERV-HA-typeAF480925.1

Genus Unclassified

NameSubgroupAccession #
KERVMarsupialEU024533.1
Ovex1Ovex1FJ406461.1
PyERVReptileAF500296.1
EAV-HP-NC_005947.1
ERV-Black_duck-I-AY820068.1
ERV-Black_duck-II-AY820069.1
ERV-Black_duck-III-AY820070.1
ERV-Black_duck-IV-AY820071.1
ERV-Black_grouse-I--
ERV-Black_grouse-II--
ERV-Black_grouse-III--
ERV-Black_grouse-IV--
ERV-Blue_tit-I-AY820077.1
ERV-Blue_tit-II-AY820078.1
ERV-Brown_kiwi-I--
ERV-Cassowary-I--
ERV-Darwins_rhea-I--
ERV-Eastern_screech_owl-III--
ERV-Eastern_screech_owl-VII--
ERV-Eastern_screech_owl-XIX--
ERV-Elegant_crested_tinamou-I--
ERV-Emu-I--
ERV-Ferruginous_hawk-I--
ERV-Flamingo-I-AY820054.1
ERV-Goshawk-I--
ERV-Great_spotted_kiwi-I--
ERV-Greater_rhea-I--
ERV-Grey_moorhen-I-AY820082.1
ERV-Little_spotted_kiwi-I--
ERV-Loon-I-AY820074.1
ERV-Marsh_harrier-I--
ERV-Ostrich-I-AY820094.1
ERV-Peacock-I--
ERV-Peregrine_falcon-I--
ERV-Ring_necked_pheasant-IV--
ERV-Tinamou-II--
ERV-Turkey_vulture-I-AY820062.1
ERV-Turkey_vulture-II--
ERV-White_fronted_goose-I--
ERV-Wood_pigeon-I--
ERV-Wood_pigeon-II-AY820090.1
GaERV-1-AANH01005884
GfERV-1--
GGERV-28--
GGERV-29--
LPDV-U09568.1
mysTR-DQ139768.1
mysTR-Reithrodontomys-HM160080.1
TERV-AF289082.1
TgERV-2a--

Subfamily Spumaretrovirinae

Supertribe Alnitakretrovirinae (class III)


Tribe Alnitak


Genus Aves-ERV-A

NameSubgroupAccession #
Gallus-ERV-A--

Genus Avian-ERV-A

NameSubgroupAccession #
GGERV-LA--
Zonotrichia-ERV-A--

Genus ERV-L

NameSubgroupAccession #
HERV-LHERV-L-
MuERV-LMuERV-L-

Genus ERV-S

NameSubgroupAccession #
HERV-SHERV-S-
GGERV-10--

Genus Unclassified

NameSubgroupAccession #
SSSV-DQ174103.1

Tribe Spuma


Genus Spumavirus

NameSubgroupAccession #
CoeEFVActinistia-
BFVBovineU94514.1
EFVEquineAF201902.1
FFVFelineY08851.1
SloEFVPilosan-
SFVcpzPrimateNC_001364.1
SFVgorPrimateHM245790.1
SFVmacPrimateX54482.1
SFVmarPrimateGU356395
SFVspiPrimateEU010385.1
SMFVPrimateGU356394.1

Genus Unclassified

NameSubgroupAccession #
ZFERV-AF503912.1