A wide range of formats exist for representing the comparisons of different sequences to each other: blast tabular, blast xml, psl, pslx, SAM/BAM, BED Most of these formats can be converted from one format to another. Sometimes the format is lossless allowing for the original data to be perfectly converted without the loss of information. […]
Read MoreShort command lines for manipulation FASTQ and FASTA sequence files
- February 23, 2015
- 9 Comments
I thought it was time for me to compile all the short command that I use on a more or less regular basis to manipulate sequence files. Convert a multi-line fasta to a singleline fasta awk ‘!/^>/ { printf “%s”, $0; n = “\n” } /^>/ { print n $0; n = “” } END […]
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